axt-format is an actively used text data format created in 2004. axt alignment files are produced from Blastz, an alignment tool available from Webb Miller's lab at Penn State University. The axtNet and axtChain alignments are produced by processing the alignment files with additional utilities written by Jim Kent at UCSC.
- axt-format first appeared in 2004
- Have a question about axt-format not answered here? Email me and let me know how I can help.
Example code from the web:
0 chr19 3001012 3001075 chr11 70568380 70568443 - 3500 TCAGCTCATAAATCACCTCCTGCCACAAGCCTGGCCTGGTCCCAGGAGAGTGTCCAGGCTCAGA TCTGTTCATAAACCACCTGCCATGACAAGCCTGGCCTGTTCCCAAGACAATGTCCAGGCTCAGA
Last updated August 9th, 2020