PhyloXML - Xml format

PhyloXML is a historical xml format created in 2009.

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PhyloXML ranks in the top 20% of languages
the PhyloXML website
the PhyloXML wikipedia page
PhyloXML first appeared in 2009
See also: xml, nexus-format, newick-format
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Example code from the web:

 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"
  xmlns="http://www.phyloxml.org">
  <phylogeny rooted="true">
     <name>example from Prof. Joe Felsenstein's book "Inferring Phylogenies"</name>
     <description>MrBayes based on MAFFT alignment</description>
     <clade>
        <clade branch_length="0.06">
           <confidence type="probability">0.88</confidence>
           <clade branch_length="0.102">
              <name>A</name>
           </clade>
           <clade branch_length="0.23">
              <name>B</name>
           </clade>
        </clade>
        <clade branch_length="0.4">
           <name>C</name>
        </clade>
     </clade>
  </phylogeny>
</phyloxml>

Example code from Wikipedia:

<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
   xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"
   xmlns="http://www.phyloxml.org">
   <phylogeny rooted="true">
      <name>example from Prof. Joe Felsenstein's book "Inferring Phylogenies"</name>
      <description>MrBayes based on MAFFT alignment</description>
      <clade>
         <clade branch_length="0.06">
            <confidence type="probability">0.88</confidence>
            <clade branch_length="0.102">
               <name>A</name>
            </clade>
            <clade branch_length="0.23">
               <name>B</name>
            </clade>
         </clade>
         <clade branch_length="0.4">
            <name>C</name>
         </clade>
      </clade>
   </phylogeny>
 </phyloxml>

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Last updated February 11th, 2019